Publications

Bo Zhang, Philip E Davis, Zhao Zhang, Keita Teranishi, Manish Parashar (2024). Dual Channel Dual Staging: Hierarchical and Portable Staging for GPU-Based In-Situ Workflow. In HiPC 2024 (Accepted).

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Gustaf Ahdritz, Nazim Bouatta, Christina Floristean, Sachin Kadyan, Qinghui Xia, William Gerecke, Timothy J O’Donnell, Daniel Berenberg, Ian Fisk, Niccolò Zanichelli, Bo Zhang, Arkadiusz Nowaczynski, Bei Wang, Marta M Stepniewska-Dziubinska, Shang Zhang, Adegoke Ojewole, Murat Efe Guney, Stella Biderman, Andrew M Watkins, Stephen Ra, Pablo Ribalta Lorenzo, Lucas Nivon, Brian Weitzner, Yih-en Andrew Ban, Shiyang Chen, Minjia Zhang, Conglong Li, Shuaiwen Leon Song, Yuxiong He, Peter K Sorger, Emad Mostaque, Zhao Zhang, Richard Bonneau, Mohammed AlQuraishi (2024). OpenFold: Retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization. Nature Methods.

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Bo Zhang, Philip E Davis, Nicolas Morales, Zhao Zhang, Keita Teranishi, Manish Parashar (2023). Optimizing Data Movement for GPU-Based In-Situ Workflow using GPUDirect RDMA. In Euro-Par 2023 (Best Paper Candidate).

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Bo Zhang, Pradeep Subedi, Philip E Davis, Francesco Rizzi, Keita Teranishi, Manish Parashar (2022). Assembling Portable In-Situ Workflow from Heterogeneous Components using Data Reorganization. In CCGrid 2022.

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